List of our publications

• Romain Ladouce, et al., Mladen Merćep: Specific detection of protein carbonylation sites by 473 nm photodissociation mass spectrometry.PMID: 37755489 DOI: 10.1007/s00216-023-04956-5
• Romain Ladouce, Guillaume Combes, Katarina Trajković, Irena Drmić Hofman, Mladen Merćep: Oxime blot: A novel method for reliable and sensitive detection of carbonylated proteins in diverse biological systems, doi.org/10.1016/j.redox.2023.102743
• Mateo Glumac, Vlatka Paštar, Anja Golemac, et al., Ivana Carev: Chemical Profiling and Bioactivity Assessment of Helichrysum italicum (Roth) G. Don. Essential Oil: Exploring Pure Compounds and Synergistic Combinations, doi.org/10.3390/molecules28145299
• Ivana Drventić, et al., Ivana Carev, Ana Kroflić: Seasonality of Polyaromatic Hydrocarbons (PAHs) and Their Derivatives in PM2.5 from Ljubljana, Combustion Aerosol Source Apportionment, and Cytotoxicity of Selected Nitrated Polyaromatic Hydrocarbons (NPAHs)
• Doris Plećaš, et al., Zoran Đogaš: Not-So-Sweet Dreams: Plasma and IgG N-Glycome in the Severe Form of the Obstructive Sleep Apnea
• Ivana Carev, Andrea Gelemanović, et al., Gianni Prosseda: Centaurea triumfetii essential oil chemical composition, comparative analysis, and antimicrobial activity of selected compounds, doi.org/10.1038/s41598-023-34058-2
• Zvonimir Jažo, Vlatka Paštar, et al., Ivana Carev: Chemical Composition and Biological Activity of Salvia officinalis L. Essential Oil, doi.org/10.3390/plants12091794
• Ivana Carev, et al., Sonja Siljak-Yakovlev: Phytochemical and Cytogenetic Study of Two Centaurea Species from Croatia: the Particular Case of Diploid and Tetraploid C. salonitana, doi.org/10.1002/cbdv.202300092
• Ivana Carev, Anja Golemac, et al., François-Xavier Pellay, O. Politeo: Volatile Oil Chemical Composition of Wild, Edible Centaurea scabiosa L. and Its Cytotoxic Activity, doi.org/10.3390/plants11233267
• Davor Juretić: Designed Multifunctional Peptides for Intracellular Targets. Antibiotics 2022, 11, 1196. doi.org/10.3390/antibiotics11091196
• Davor Juretić: Bioenergetics: A Bridge Across Life and Universe; CRC Press, Boca Raton, FL, USA. 2022. doi.org/10.1201/9781351172769
• Davor Juretić: Bioenergetics: A Bridge Across Life and Universe; CRC Press, Boca Raton, FL, USA. 2022. doi.org/10.1201/9781351172769
• Miroslav Radman: Speciation of Genes and Genomes: Conservation of DNA Polymorphism by Barriers to Recombination Raised by Mismatch Repair System doi.org/10.3389/fgene.2022.803690
• Sang Hyun Lim, et al., Igor Štagljar: CFTR interactome mapping using the mammalian membrane two-hybrid high-throughput screening system doi.org/10.15252/msb.202110629
• Ingrid Grozavu, et al., Igor Štagljar: D154Q Mutation does not Alter KRAS Dimerization PMID: 34896362 DOI: 10.1016/j.jmb.2021.167392
• Davor Juretić, Željana Bonačić Lošić: Comments on 'Flexibility of enzymatic transitions as a hallmark of optimized enzyme steady-state kinetics and thermodynamics' doi.org/10.1016/j.compbiolchem.2021.107571
• Ana Miljaković, Andrea Gelemanović, et al., I. Kolčić: The association of dispositional optimism and handedness with pressure pain: A cross-sectional study in the general population. Personality and Individual Differences. 2022;185;111265. doi:10.1016/j.paid.2021.111265
• Marijana Vučković, Andrea Gelemanović, et al., Mislav Radić: Mediterranean Diet Adherence and Nutritional Status in Dalmatian Kidney Transplant Recipients – Are They Related?. Nutrients. 2021;13(9):3246. doi:10.3390/nu13093246
• Anita Horvatić, Andrea Gelemanović, et al., Marija Lipar: Multi-Omics Approach to Elucidate Cerebrospinal Fluid Changes in Dogs with Intervertebral Disc Herniation. International Journal of Molecular Sciences. 2021;22(21):11678.
• Josipa Kuleš, Andrea Gelemanović, et al., Dean Konjević: Complementary liver and serum protein profile in wild boars infected by the giant liver fluke Fascioloides magna using tandem mass tags quantitative approach. Journal of Proteomics. 2021;247:104332. doi:10.1016/j.jprot.2021.104332
• Romana Turk, Andrea Gelemanović, et al., P. David Eckersall: Milk and serum proteomes in subclinical and clinical mastitis in Simmental cows. Journal of Proteomics. 2021;244:104277. doi:10.1016/j.jprot.2021.104277
• Ivana Carev, Cengiz Sarikurkcu: LC-MS/MS Profiles and In Vitro Biological Activities of Extracts of an Endemic Species from Turkey: Stachys cretica ssp. anatolica. doi.org/10.3390/plants10061054
• Ines Liebscher, Katarina Trajković, et al., Simone Prömel: A Guide to Adhesion GPCR research. FEBS J. 2021 Nov 2. doi: 10.1111/febs.16258. PMID: 34729908
• Farzaneh Aboualizadeh, et al., Igor Štagljar: Mapping the Phospho-dependent ALK Interactome to Identify Novel Components in ALK Signaling doi.org/10.1016/j.jmb.2021.167283
• Punit Saraon, et al., Igor Štagljar: Chemical Genetics Screen Identifies COPB2 Tool Compounds That Alters ER Stress Response and Induces RTK Dysregulation in Lung Cancer Cells doi.org/10.1016/j.jmb.2021.167294
• Vlatka Paštar, Branka Bernard, et al., Katarina Vukojević: Connexin Expression Is Altered in Liver Development of Yotari (dab1 -/-) Mice, Int. J. Mol. Sci. 2021, 22(19), 10712; https://doi.org/10.3390/ijms221910712
• Shivanthy Pathmanathan, Ingrid Grozavu, Anna Lyakisheva, Igor Štagljar: Drugging the undruggable proteins in cancer: A systems biology approach. doi.org/10.1016/j.cbpa.2021.07.004
• Guillaume Combes, Ana-Marija Vučković, Martina Perić, Rodolphe Antoine, Vlasta Bonačić-Koutecký, Katarina Trajković: Nanotechnology in Tumor Biomarker Detection: The Potential of Liganded Nanoclusters as Nonlinear Optical Contrast Agents for Molecular Diagnostics of Cancer . Cancers, 21 Aug 2021. doi.org/10.3390/ cancers13164206
• Punit Saron, Shivanthy Pathmanathan, J Snider, Anna Lyakisheva, Victoria Wong, Igor Štagljar: Receptor tyrosine kinases and cancer: oncogenic mechanisms and therapeutic approaches doi.org/10.1038/s41388-021-01841-2
• Guillaume Combes, Hussein Fakhouri, Romain Ladouce, et al., Anita Kriško, Katarina Trajković, Miroslav Radman, Vlasta Bonačić-Koutecký, Rodolphe Antoine: Functionalized Au15 nanoclusters as luminescent probes for protein carbonylation detection Communications Chemistry 14 May 2021. doi.org/10.1038/s42004-021-00497-z
• N Martínez, et al., Igor Štagljar, JR Rodríguez-Medina: Toward the discovery of biological functions associated with the mechanosensor Mtl1p of Saccharomyces cerevisiae via integrative multi-OMICs analysis
• Zhong Yao, Luka Drecun, Farzaneh Aboualizadeh, et al., Igor Štagljar: A homogeneous split-luciferase assay for rapid and sensitive detection of anti-SARS CoV-2 antibodies ,https://doi.org/10.1038/s41467-021-22102-6 O
• Stéphanie Miserey-Lenkei, Katarina Trajković, Juan Martín D'Ambrosio , Amanda J Patel, Alenka Čopič, Pallavi Mathur, Kristine Schauer, Bruno Goud, Véronique Albanèse , Romain Gautier, Melody Subra, David Kovacs, Hélène Barelli, Bruno Antonny: A comprehensive library of fluorescent constructs of SARS-CoV-2 proteins and their initial characterization in different cell types Biol Cell. 2021 Mar 5. PMID: 33666950 DOI: 10.1111/boc.202000158
• Andrea Gelemanović, Tinka Vidović, Višnja Stepančić, Katarina Trajković: Identification of 37 Heterogeneous Drug Candidates for Treatment of COVID-19 via a Rational Transcriptomics-Based Drug Repurposing Approach. Pharmaceuticals (Basel). 2021 Jan 25;14(2):87 doi.org/10.3390/ph14020087 PMID: 33504008
• Mladen Merćep: Hiperbarična oksigenacija i COVID-19, Medix 144/145, 192-196;
• Vladimir Velez-Segarra, Sahily Gonzalez-Crespo, E. Santiago-Cartagena, Igor Štagljar, JR Rodríguez-Medina, et al.: Protein Interactions of the Mechanosensory Proteins Wsc2 and Wsc3 for Stress Resistance in Saccharomyces cerevisiae, G3 (Bethesda). 2020 Jul 8: g3.401468.2020. DOI: 10.1534/g3.120.401468 PMID: 32641451
• Shin-Haw Lee, Sina Hadipour-Lakmehsari, Harsha R Murthy, Igor Štagljar, Anhony O Gramolini, et al.: REEP5 depletion causes sarco(endo)plasmic reticulum vacuolization and cardiac functional defects, Nature Communication 11 (1) 569, PMID 32075961.
• Zhong Yao, Farzaneh Aboualizadeh, Jason Kroll, Indira Akula, J Snider, Anna Lyakisheva, Priscilla Tang, Max Kotlyar, Igor Jurisica, Mike Boxem, Igor Štagljar: Split Intein Mediated Protein Ligation (SIMPL), a method for detecting protein-protein interactions and their inhibition, Nature Communications 2020 May 15;11(1): 2440. doi: 10.1038/s41467-020-16299-1 PMID: 32415080
• Miroslav Radman: Dysfunction and toxicity of damaged proteins in the etiology of aging and age-related degenerative and malignant diseases ,doi: 10.3325/cmj.2020.61.159
• Susan A Kennedy, Mohamed-Ali Jarboui, Sriganesh Srihari, Igor Štagljar, Walter Kolch, et al.: Extensive rewiring of the EGFR network in colorectal cancer cells expressing transforming levels of KRASG13D. Nat Commun. 2020 Jan 24;11(1):499. doi: 10.1038/s41467-019-14224-9. PMID: 31980649; PMCID: PMC6981206.
• Guillaume Combes, François-Xavier Pellay, Miroslav Radman: 13. Combes, G.F., Pellay, F.X. and Radman, M., 2020. Common cause and mechanism for all pathologies of aging?. Medecine Sciences: M/S, 36(12), pp.1129-1134. PMID: 33296629
• Lorena Franco-Martinet, Andrea Gelemanović, Anita Horvatić, Maria Dolores Contreras-Aguilar, Vladimir Mrljak, Jose Joaquin Ceron, Silvia Martiniez-Subiela, Asta Tvarijonaviciute: The serum and saliva proteome of dogs with diabetes mellitus. The Serum and Saliva Proteome of Dogs with Diabetes Mellitus. Animals (Basel). 2020; 10(12):2261. doi: 10.3390/ani10122261.PMID: 33271797 PMCID: PMC7760505
• Rania Baka, David Eckersall, Anita Horvatić, Andrea Gelemanović, Vladimir Mrljak, Mark McLaughlin, Labirni V Athanasiou, Nikolaos Papaioannou, Ioann Stylianki, Han Qouang Hanh, Christoper C Chadwick, Zoe Polizopoulou: Quantitative proteomics of cerebrospinal fluid using tandem mass tags in dogs with recurrent epileptic seizures. J Proteomics. 2020; 231:103997. doi: 10.1016/j.jprot.2020.103997. PMID: 33011347
• Boris Jakopović, Anita Horvatić, Marko Klobučar, Andrea Gelemanović, Petra Grbčić, Nada Oršolić, Ivan Jakopovich, Sandra Kraljević Pavelić: Treatment With Medicinal Mushroom Extract Mixture Inhibits Translation and Reprograms Metabolism in Advanced Colorectal Cancer Animal Model as Evidenced by Tandem Mass Tags Proteomics Analysis. Front Pharmacol. 2020; 11:1202. doi: 10.3389/fphar.2020.01202. PMID: 32973493 PMCID: PMC7472604
• Lorena Franco-Martinet, Anita Horvatić, Andrea Gelemanović, Marko Samardžija, Vladimir Mrljak, Maria Dolores Contreras-Aguilar, Silvia Martiniez-Subiela, Roman Dabrowski, Asta Tvarijonaviciute: Changes in the Salivary Proteome Associated With Canine Pyometra. Front Vet Sci. 2020; 7:277. doi: 10.3389/fvets.2020.00277.
• Charles Auffray, Rudi Balling, Niklas Blomberg, Andrea Gelemanović, et al.: COVID-19 and beyond: a call for action and audacious solidarity to all the citizens and nations, it is humanity’s fight. F1000Res (Open Peer Review); 2020. doi: 10.12688/f1000research.26098.1.
• Lorena Franco-Martinet, Andrea Gelemanović, Anita Horvatić, Maria Dolores Contreras-Aguilar, Roman Dabrowski, Vladimir Mrljak, Jose Joaquin Ceron, Silvia Martiniez-Subiela, Asta Tvarijonaviciute: Changes in Serum and Salivary Proteins in Canine Mammary Tumors. Animals (Basel). 2020; 10(4):741. doi: 10.3390/ani10040741
• Sanja Radman, Sanda Raić, I. Bućan, A. Pribisalić, Josipa Dunatov, I. Mudnić, M Boban, François-Xavier Pellay, I. Kolčić, Ozren Polašek: Mudnić I, Boban M, Pellay FX, Kolčić I, Polašek O. Searching for carbonylome biomarkers of aging - development and validation of the proteomic method for quantification of carbonylated protein in human plasma. Croat Med J. 2020 Apr 30;61(2):119-125. doi: 10.3325/cmj.2020.61.119. PMID: 32378378; PMCID: PMC7230409.
• Davor Juretić, Anja Golemac, Denise Strand, Keshi Chung, Nada Ilić, I. Goić-Barišić, François-Xavier Pellay: The Spectrum of Design Solutions for Improving the Activity-Selectivity Product of Peptide Antibiotics against Multidrug-Resistant Bacteria and Prostate Cancer PC-3 Cells. Molecules. 2020 Aug 1;25(15):3526. doi: 10.3390/molecules25153526. PMID: 32752241; PMCID: PMC7436000.
• Punit Saron, J Snider, Yannis Kalaidzidis, Leanne E. Wybenga-Groot, Konstantin Weiss, Ankit Rai, Nikolina Radulovich, Luka Drecun, Nika Vučković, Adriana Vučetić, Victoria Wong, Brigiitte Theriault, Nhu-An Pham, Jin H. Park, Alessandro Datti, Jenny Wang, Shivanthy Pathmanathan, Farzaneh Aboualizadeh, Anna Lyakisheva, Zhong Yao, Yuhui Wang, Babu Joseph, Ahmed Aman, Michael F. Moran, Michael Prakesch, Gennady Poda, Richard Marcellus, David Uehling, Miroslav Samržija, Marko Jakopović, Ming-Sound Tsao, Frances A. Shepherd, Adrian Sacher, Natasha Leighi, Anna Akhmanova, Rima Al-awar, Marino Zerial, Igor Štagljar: A drug discovery platform to identify compounds that inhibit EGFR triple mutants
• Albi Celaj, Marinella Gebbia, Loaui Musa, Atina G. Cote, J Snider, Vanja Nagy, Minjeong Ko, Tiffany Fong, Paul Bansal, Joseph C. Mellor, Gireesh Seesankar, Marija Nguyen, Sašo Džeroski, Liangxi Wang, Nishka Kishore, Igor Štagljar, Yo Suzuki, Nozomu Yachie, Frederick P Roth: Highly Combinatorial Genetic Interaction Analysis Reveals a Multi-Drug Transporter Influence Network
• Rita Banzi, Karmela Krleža-Jerić, et al.: Evaluation of repositories for sharing individual-participant data from clinical studies. Trials. 2019;20(1):169. Published 2019 Mar 15. doi:10.1186/s13063-019-3253-3
• Miroslav Radman: Ecobiological approach to research regarding ageing and diseases. Eur J Dermatol. 2019;29(S1):11–14. doi:10.1684/ejd.2019.3534
• Anita Kriško, Miroslav Radman: Protein damage, ageing and age-related diseases Open Biol. 2019;9(3):180249. doi:10.1098/rsob.180249
• Miroslav Radman: Cellular parabiosis and the latency of age-related diseases Open Biol. 2019;9(3):180250. doi:10.1098/rsob.180250
• Davor Juretić, Juraj Simunić: Design of α-helical antimicrobial peptides with a high selectivity index. Expert Opin Drug Discov. 2019 Jul 16:1-11. doi: 10.1080/17460441.2019.1642322. [Epub ahead of print] PubMed PMID: 31311351.
• Davor Juretić, Željana Bonačić Lošić, Domagoj Kuić, Juraj Simunić, Andrej Dobovišek: The maximum entropy production requirement for proton transfers enhances catalytic efficiency for β-lactamases. Biophys Chem. 2019 Jan;244:11-21. doi: 10.1016/j.bpc.2018.10.004. Epub 2018 Oct 17. PubMed PMID: 30448627.
• Punit Saron, Ingrid Grozavu, Igor Štagljar: Saraon P, Grozavu I, Stagljar I. Testing cancer inhibitors at scale. Nat Biomed Eng. 2018 Apr;2(4):203-204. doi: 10.1038/s41551-018-0226-x. PubMed PMID: 30936440.
• E. Santiago-Cartagena, S González-Crespo, V Vélez, N Martínez, J Snider, M Jessulat, H Aoki, Z Minic, P Akamine, I Mejías, LM Pérez, BC Rymond, M Babu, Igor Štagljar: Identification and Functional Testing of Novel Interacting Protein Partners for the Stress Sensors Wsc1p and Mid2p of Saccharomyces cerevisiae. G3 (Bethesda). 2019 Feb 7. pii: g3.200985.2018. doi: 10.1534/g3.118.200985. [Epub ahead of print] PubMed PMID: 30733383
• Cinza Colombo, Anna Roberto, Karmela Krleža-Jerić, Elena Parmelli, Rita Banzi: Sharing individual participant data from clinical studies: a cross-sectional online survey among Italian patient and citizen groups BMJ Open 2019;9:e024863. doi:10.1136/bmjopen-2018-024863
• Marina Musa, Matea Kanunnikau, Peter Bou Dib, Sandra Sobočanec, Ana Šarić, Anita Lovrić, Marina Rudan, Andrea Nikolić, Ira Milošević, Krisijan Vlahoviček, Nuno Raimundo, Anita Kriško: Heat-induced longevity in budding yeast requires respiratory metabolism and glutathione recycling. Aging (Albany NY). 2018 Sep 17;10(9):2407-2427. doi: 10.18632/aging.101560. PubMed PMID: 30227387.
• Davor Juretić, Yogesh Sonavane, Nada Ilić, Goran Gajski, Ivana Goić-Barišić, Matea Kanunnikau, Marija Tonkić, Mara Kozic, Ana Maravić, François-Xavier Pellay, Larisa Zoranić: Designed peptide with a flexible central motif from ranatuerins adapts its conformation to bacterial membranes. Biochim Biophys Acta Biomembr. 2018 Dec;1860(12):2655-2668. doi: 10.1016/j.bbamem.2018.10.005. Epub 2018 Oct 4. PubMed PMID: 30292398
• Mersiha Marhmic-Kaknjo, Josip Šimić, Karmela Krleža-Jerić: Setting the IMPACT (IMProve Access to Clinical Trial data) Observatory baseline. Biochem Med (Zagreb). 2018 Feb 15;28(1):010201. doi:10.11613/BM.2018.010201. Review. PubMed PMID: 29472799; PubMed Central PMCID: PMC5806612.
• Tomislav Rončević, Damir Vukičević, Nada Ilić, Lucija Krce, Goran Gajski, Marija Tonkić, Ivana Goić-Barišić, Larisa Zoranić, Yogesh Sonavane, Monica Benincasa, Davor Juretić, Ana Maravić, Alessandro Tossi: Antibacterial Activity Affected by the Conformational Flexibility in Glycine-Lysine Based α-Helical Antimicrobial Peptides. J Med Chem. 2018 Mar 29. doi: 10.1021/acs.jmedchem.7b01831. [Epub ahead of print] PubMed PMID: 29553266.
• Marina Rudan, Peter Bou Dib, Marina Musa, Matea Kanunnikau, Sandra Sobočanec, David Rueda, Tobias Warnecke, Anita Kriško: Normal mitochondrial function in Saccharomyces cerevisiae has become dependent on inefficient splicing. Elife. 2018 Mar 23;7. pii: e35330. doi: 10.7554/eLife.35330. [Epub ahead of print] PubMed PMID: 29570052
• Nuno Raimundo, Anita Kriško: Raimundo N, Kriško A. Cross-organelle communication at the core of longevity. Aging (Albany NY). 2018 Jan 22;10(1):15-16. doi: 10.18632/aging.101373. PubMed PMID: 29362289; PubMed Central PMCID: PMC5811256
• Matea Kanunnikau, Anita Lovrić, Ana Šarić, Marina Musa, Peter Bou Dib, Marina Rudan, Andrea Nikolić, Sandra Sobočanec, Ana-Matea Mikecin, Sven Dennerlein, Ira Milošević, Krisijan Vlahoviček, Nuno Raimundo, Anita Kriško: TORC1-mediated sensing of chaperone activity alters glucose metabolism and extends lifespan. Aging Cell. 2017 Oct;16(5):994-1005. doi: 10.1111/acel.12623. Epub 2017 Jun 14. PubMed PMID: 28613034; PubMed Central PMCID: PMC5595670.
• Davor Juretić, Damir Vukičević, Alessandro Tossi: Tools for Designing Amphipathic Helical Antimicrobial Peptides. Methods Mol Biol. 2017;1548:23-34. doi: 10.1007/978-1-4939-6737-7_2. PubMed PMID: 28013494
• Željana Bonačić Lošić, Tomislav Donđivić, Davor Juretić: Is the catalytic activity of triosephosphate isomerase fully optimized? An investigation based on maximization of entropy production. J Biol Phys. 2017 Mar;43(1):69-86. doi: 10.1007/s10867-016-9434-3. Epub 2017 Jan 3. PubMed PMID: 28050739; PubMed Central PMCID: PMC5323346.
• Tomislav Rončević, Goran Gajski, Nada Ilić, Ivana Goić-Barišić, Marija Tonkić, Larisa Zoranić, Juraj Simunić, Monica Benincasa, Marijana Mijaković, Alessandro Tossi, Davor Juretić: PGLa-H tandem-repeat peptides active against multidrug resistant clinical bacterial isolates. Biochimica et Biophysica Acta 1859 (2017) 228–237
• Mira Kuzmić, Helene Javot, Jean-Marc Bonzom, Catherine Lecomte-Pradines, Miroslav Radman, Jacqueline Garnier-Laplacea, Sandrine Frelon: In situ visualization of carbonylation and its co-localization with proteins, lipids, DNA and RNA in Caenorhabditis elegans : Free Radic Biol Med. 2016 Nov 10. pii: S0891-5849(16)31029-2. doi: 10.1016/j.freeradbiomed.2016.11.004
• Matea Kanunnikau, Peter Bou Dib, Sven Dennerlein, Marina Musa, Marina Rudan, Anita Lovrić, Andrea Nikolić, Ana Šarić, Sandra Sobočanec, Željka Mačak, Nuno Raimundo, Anita Kriško: Crosstalk between cellular compartments protects against proteotoxicity and extends lifespan. Sci Rep. 2016 Jun 27;6:28751. doi: 10.1038/srep28751. PubMed PMID: 27346163; PubMed Central PMCID: PMC4921836.
• Andrea Nikolić, Matea Kanunnikau, Romain Ladouce, Ana-Matea Mikecin, Fernando A. Martin , Marijeta Kralj, Anita Kriško, Miroslav Radman: Death by UVC Light Correlates with Protein Damage in Isogenic Human Tumor Cells: Primary Tumor SW480 versus its Metastasis SW620. Journal of Proteomics and Computational Biology (2016), 2 (1): 12.
• Marina Musa, Miroslav Radman, Anita Kriško: Decreasing translation error rate in Escherichia coli increases protein function. BMC Biotechnol 2016; 16 (1): 28.
• Miroslav Radman: Protein damage, radiation sensitivity and aging DOI: 10.1016/j.dnarep.2016.05.025 PMID: 27264559
• Miroslav Radman: Mismatch repair earns Nobel Prize in Chemistry 2015 to Paul Modrich for a biochemical tour de force. / DNA Repair 37 (2016) A22–A28
• Maria Brbic, Tobias Warnecke, Anita Kriško, Fran Supek: Global shifts in genome and proteome composition are very tightly coupled. 2015. Genome Biol. Evol. 7(6):1519–1532.
• Marina Rudan, Dominique Schneider, Tobias Warnecke, Anita Kriško: RNA chaperones buffer deleterious mutations in E. coli. Elife. 2015 Mar 25;4. doi: 10.7554/eLife.04745. PubMed PMID: 25806682; PubMed Central PMCID: PMC4402597.
• Anita Lovrić, Fran Supek, Andrea Nikolić, Anita Kriško: Signatures of conformational stability and oxidation resistance in proteomes of pathogenic bacteria. Cell Rep 2014; 7: 1393-1400
• Anita Kriško, Tea Copić, Toni Gabaldón, Ben Lehner, Fran Supek: Inferring gene function from evolutionary change in signatures of translation efficiency. Genome Biol 2014; 15:R44.
• Marion Girod, Quentin Enjalbert, Claire Brunet, Rodolphe Antoine, Jerome Lemoine, Iva Lukac, Miroslav Radman, Anita Kriško, Philippe Dugourd: Structural basis of protein oxidation resistance: a lysozyme study. Plos One 2014; 9: e101642.
• Manière X, Anita Kriško, François-Xavier Pellay, Di Meglio JM, Hersen P, Ivan Matic: High transcript levels of heat-shock genes are associated with shorter lifespan of Caenorhabditis elegans. Experimental Gerontology 2014, 60C: 12-17.
• Anita Kriško, Miroslav Radman: Phenotypic and genetic consequences of protein damage. Plos Genetics 2013; 9(9): e1003810.
• Anita Kriško, Miroslav Radman: Biology of Extreme Radiation Resistance: The Way of Deinococcus radiodurans. Cold Spring Harb Perspect Biol. 2013; 5(7).
• Nives Skunca, Matko Bosnjak, Anita Kriško, Pance Panov, Sašo Džeroski, Tomislav Šmuc: Phyletic profiling with cliques of orthologs is enhanced by signatures of paralogy relationships. PLoS Comput Biol. 2013;9(1):e1002852.
• Miroslav Radman: [Aging: the chemistry of a flexible biological clock]. Med Sci (Paris). 2012 Mar;28(3):231-3. doi: 10.1051/medsci/2012283001. Epub 2012 Apr 6. French. PubMed PMID:
• Anita Kriško, Magali Leroy, Miroslav Radman, Matthew Meselson: Extreme anti-oxidant protection against ionizing radiation in bdelloid rotifers. Proc Natl Acad Sci U S A. 2012;109(7): 2354-2357.
• Nela Nikolic, Zlatko Smole, Anita Kriško: Proteomic properties reveal phyloecological clusters of Archaea. PLoS One. 2012; 7(10):e48231.
• Marina Elez, Miroslav Radman, Ivan Matic: Stoichiometry of MutS and MutL at unrepaired mismatches in vivo suggests a mechanism of repair. Nucleic Acids Research, 2012, Vol. 40, No. 9 3929–3938
• Dea Slade, Miroslav Radman: Oxidative stress resistance in Deinococcus radiodurans. Microbiol Mol Biol Rev. 2011;75(1):133-91.
• Zlatko Smole, Nela Nikolic, Fran Supek, Tomislav Šmuc, Ivo Sbalzarini, Anita Kriško: Proteome sequence features carry signatures of the environmental niche of prokaryotes. BMC Evol Biol. 2011;11:26.
• Marina Elez, Andrew W. Murray, Li-Jun Bi, Xian-En Zhang, Ivan Matic, Miroslav Radman: Seeing mutations in living cells. Curr Biol. 2010;20(16):1432-7.
• Anita Kriško, Miroslav Radman: Protein damage and death by radiation in Escherichia coli and Deinococcus radiodurans. Proc Natl Acad Sci U S A. 2010; 107(32): 14373-14377.
• Anita Kriško, Zlatko Smole, Gaelle Debret, Nela Nikolic, Miroslav Radman: Unstructured hydrophilic sequences in prokaryotic proteomes correlate with dehydration tolerance and host association. J Mol Biol 402: 775-82. (2010)
• Jelena Repar, Svjetlana Cvjetan, Dea Slade, Miroslav Radman, Ksenija Zahradka: RecA protein assures fidelity of DNA repair and genome stability in Deinococcus radiodurans. DNA Repair 9: 1151-1161. (2010)
• Omar Awile, Anita Kriško, Ivo Sbalzarini: Intrinsically disordered regions may lower the hydration free energy in proteins: a case study of nudix hydrolase in the bacterium Deinococcus radiodurans. Plos Comput Biol, 6 (7):e1000854. (2010)
• Mario Hlevnjak, Gordan Zitkovic, Bojan Žagrović: Hydrophilicity matching - a potential prerequisite for the formation of protein-protein complexes in the cell. PLoS One. 2010; 5(6):e11169.
• Antonija Kuzmanić, Bojan Žagrović: Determination of ensemble-average pairwise root mean-square deviation from experimental B-factors. Biophys J. 2010; 98(5):861-71
• Ivana Novak, Vladimir Kirkin, David G. McEwan , Philipp Wild , Alexis Rozenknop, Vladimir Rogov, Doris Popović, Angelo Occhipinti, Andreas S. Reichert, Janos Terzic, Volker Dotsch, Paul A. Ney, Ivan Đikić: Nix is a selective autophagy receptor for mitochondrial clearance, EMBO reports (2010) 11, 45 – 51
• Vanja Nagy, Ivan Đikić: Ubiquitin ligase complexes: from substrate selectivity to conjugational specificity. Biol Chem. 2010, 391(2-3):163-9.
• Dea Slade, Ariel B. Lindner, Gregory Paul, Miroslav Radman: "Recombination and replication in DNA repair of heavily irradiated Deinococcus radiodurans", Cell (2009) 136:1044-1055; IF 31.3
• Christian L. Müller, Ivo Sbalzarini, Wilfred F. van Gunsteren, Bojan Žagrović, Philippe H. Hünenberger: “In the eye of the beholder: inhomogeneous distribution of high-resolution shapes within the random-walk ensemble“, Journal of Chemical Physics, 130, 21, 214904; IF 3.149 (2009)
• Daniela Kruschel, Bojan Žagrović: “Conformational averaging in structural biology: issues, challenges and computational solutions”, Molecular Biosystems, (2009) DOI: 10.1039/b917186j; IF 4.236
• Tomasz Wlodarski, Bojan Žagrović: “Conformational selection and induced fit mechanism underlie specificity in non-covalent interactions with ubiquitin”,(2009) DOI:10.1073/pnas.0906966106
• JT Martinsohn, Miroslav Radman, MA Petit: The lambda red proteins promote efficient ecombination between diverged sequences: implications for bacteriophage genome mosaicism. PLoS Genet. 2008 May 2;4(5):e1000065. doi: 10.1371/journal.pgen.1000065. PubMed PMID: 18451987; PubMed Central PMCID: PMC2327257.
• A Babić, Ariel B. Lindner, M Vulić, EJ Stewart, Miroslav Radman: Direct visualization of horizontal gene transfer. Science. 2008 Mar 14;319(5869):1533-6. doi: 10.1126/science.1153498. PubMed PMID: 18339941.
• Marina Elez, Miroslav Radman, Ivan Matic: The frequency and structure of recombinant products is determined by the cellular level of MutL. Proc Natl Acad Sci U S A. 2007 May 22;104(21):8935-40. Epub 2007 May 14. PubMed PMID: 17502621; PubMed Central PMCID: PMC1885606
• Ksenija Zahradka, Dea Slade, A Bailone, S Sommer, D Averbeck, M Petranović, Ariel B. Lindner, Miroslav Radman: Reassembly of shattered chromosomes in Deinococcus radiodurans. Nature. 2006 Oct 5;443(7111):569-73. Epub 2006 Sep 27. PubMed PMID: 17006450
• Ivan Matic, D Ekiert, Miroslav Radman, M Kohiyama: Generation of DNA-free Escherichia coli cells by 2-aminopurine requires mismatch repair and nonmethylated DNA. J Bacteriol. 2006 Jan;188(1):339-42. PubMed PMID: 16352851; PubMed Central PMCID: PMC1317583
• W Banzhaf, G Belson, S Christensen, JA Foster, F Képès, V Lefort, JF Miller, Miroslav Radman, JJ Ramsden: Guidelines: From artificial evolution to computational evolution: a research agenda. Nat Rev Genet. 2006 Sep;7(9):729-35. Epub 2006 Aug 8. PubMed PMID: 16894364
• EC Friedberg, R Wagner, Miroslav Radman: Specialized DNA polymerases, cellular survival, and the genesis of mutations. Science. 2002 May 31;296(5573):1627-30. Review. PubMed PMID: 12040171.
• M Vulić, RE Lenski, Miroslav Radman: Mutation, recombination, and incipient speciation of bacteria in the laboratory. Proc Natl Acad Sci U S A. 1999 Jun 22;96(13):7348-51. PubMed PMID: 10377417; PubMed Central PMCID: PMC22088.
• François Taddei, H Hayakawa, M Bouton, A Cirinesi, Ivan Matic, M Sekiguchi , Miroslav Radman: Counteraction by MutT protein of transcriptional errors caused by oxidative damage. Science. 1997 Oct 3;278(5335):128-30. PubMed PMID: 9311918.
• François Taddei, Miroslav Radman, J Maynard-Smith, B Toupance, PH Gouyon: Role of mutator alleles in adaptive evolution. Nature. 1997 Jun 12;387(6634):700-2. PubMed PMID: 9192893.
• N de Wind, M Dekker, A Berns, Miroslav Radman, H te Riele: Inactivation of the mouse Msh2 gene results in mismatch repair deficiency, methylation tolerance, hyperrecombination, and predisposition to cancer. Cell. 1995 Jul 28;82(2):321-30. PubMed PMID: 7628020
• Ivan Matic, C Rayssiguier, Miroslav Radman: Interspecies gene exchange in bacteria: the role of SOS and mismatch repair systems in evolution of species. Cell. 1995 Feb 10;80(3):507-15. PubMed PMID: 7859291
• MC Kricker, JW Drake, Miroslav Radman: Duplication-targeted DNA methylation and mutagenesis in the evolution of eukaryotic chromosomes. Proc Natl Acad Sci U S A. 1992 Feb 1;89(3):1075-9. PubMed PMID: 1736289; PubMed Central PMCID: PMC48388.
• C Rayssiguier, DS Thaler, Miroslav Radman: The barrier to recombination between Escherichia coli and Salmonella typhimurium is disrupted in mismatch-repair mutants. Nature. 1989 Nov 23;342(6248):396-401. PubMed PMID: 2555716.
• M Jones, R Wagner, Miroslav Radman: Mismatch repair and recombination in E. coli. Cell. 1987 Aug 14;50(4):621-6. PubMed PMID: 2955904.
• Glickman BW, Miroslav Radman: Escherichia coli mutator mutants deficient in methylation-instructed DNA mismatch correction. Proc Natl Acad Sci U S A. 1980 Feb;77(2):1063-7. PubMed PMID: 6987663; PubMed Central PMCID: PMC348424.
• Miroslav Radman: An endonuclease from Escherichia coli that introduces single polynucleotide chain scissions in ultraviolet-irradiated DNA. J Biol Chem. 1976 Mar 10;251(5):1438-45. PubMed PMID: 3498.
• Miroslav Radman: SOS repair hypothesis: phenomenology of an inducible DNA repair which is accompanied by mutagenesis. Basic Life Sci. 1975;5A:355-67. Review. PubMed PMID: 1103845.